CDS
| Accession Number | TCMCG016C11059 |
| gbkey | CDS |
| Protein Id | OMO82668.1 |
| Location | complement(join(12614..12850,12981..13147,13306..13444,13728..14007,14372..14541,15461..15686,16311..16533,16764..16912,17699..17805,18365..18436,18521..18568,18932..19075,19196..19286,19394..19589,20413..20596,21358..21432,21776..21905,22028..22187,22289..22363,22456..22801)) |
| Organism | Corchorus capsularis |
| locus_tag | CCACVL1_11818 |
Protein
| Length | 1072aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215142; BioSample:SAMN03290679; |
| db_source | AWWV01009972.1 |
| Definition | RNA-dependent RNA polymerase, eukaryotic-type [Corchorus capsularis] |
| Locus_tag | CCACVL1_11818 |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGAAGGAAATTTAGTGAATTTCCAGGAGGCTAAGGGTGTTCCTCTACCTCCAACTGTGGAAGCGGCAATTTCCAGAATACGTTGTAAGCACGACCAACCGCCTCTTTCCGAATCCACCAGGCAGAAATTGGCTTCCATTGGCGAAGCAGAATCTTTGAGGATGTTAAAGATAAGCGAAAATAAGGAGGTACTTTATTCATTTGAGAACTATCTAAAGGCTTTGATACAAAATGGAACAAACTCTCCACAGAAACGACCCTCTTCTTCTCAAGGGATTTGTAGCTCCACCTCCTTATCTTCTCCCGGTAAAACTATTCGATTGATGAATTCTTCTTCTTCTCCAGGGGCAAATAATGGAGATTTTCAGACTCCAACTACTACTCAAGTTCAAACTTACCCACTGATGAGTTGTTCTCAAGGAGCTGAGAGTGGAGTTATTCAGACCCCAGCTTTTCCTACTCCTCCTTTGAGTGCTTCATCAGCAAATGTTGCCATAGAGGGAGGTTCTGGCTCTCATTTAGAAGCTTTGGGGGAACTTCAATTCCGAAAACAGTTCCTCATTTTAAATTATATTGGCTTGGAAAAACTGGAAGAAGCATTTAAGACTGCCGATGAAATTCGAAAGCTAAAAGATTTGGCAATGGATGATTTTGAGGATAAAGTTTGTGATGCTGCTGGGGGCTCTATGAAATTAGCTGACCGTTGCAAGTCATCTCAGTGGGAGTCTGGAATGACTCATAATTACTATTGTCATGTCTCTGATAATAGAAGTTTTAATTTCAAGGGCCCATATCTAGACAAGGCTAGAAATCATTTACAAAAGGTTTTAGGAGATGATAACATTCTCAATGTGAAATTTGACAACGTCAAGGATGATAAAAGCTCAGCCAGGAATCATCGTTATGCTGTATATAGAAAAATTGCAAAAGAAGGAATCGTAGTCGGTTTGCGTCGTTACCGTTTTTTTGTGTTCAAGGATGGAGGTAAAGAAGCAAGAAAGAAAGACCCAACTGCATCAGTCAGGTGCTATTTTGTTAGATTTGAGTCTAATGCATCAATTGATGATGGTGAAGAGTACATTTTATCTGGGAAGACAGTTCAAGATGCCAGATGTGTGTTTATGCATATTCACACCGTGTCAAATATGGCCAAATATATGGCCAGATTTTCTCTAATCTTGTCAAAGACCATGAAGCTGGAAGTTGATATGACTGATCAAGTCAATGTTGAAAAGATAGAGGATATACTTTGCCTGGATGAAGATGGTTGTTCTGTTTACGATAAAGATGGAAAGCCACGGATACACTCAGATGGAACTGGTTATATATCAGAGGATTTGGCACTGAAATGCCCAGCGAATGTTTTCAAAGGAAGCATCCTGAAAGGTTACAATGTTGAGGGCAAGCTATCAGACATAGAACAGACAGAATCTCATCATAGGGTACCGCCGCTCCTGGTGCAAGTTCGCCTCTTTCACAAAGGTCGTGCTGTCAAGGGAACCTTACTTGTCAATAAAAAGCTTCCACATGGAACAATTCAAATTCGGCCTTCCATGATTAAAGTTGAACAAGATCCAGAGCGGTCAAATATTTGCACGAGGGATTCACTGGAAGTAGTTACAACAAGCAATCAACCAAGAAATACTACTCTTTCAAGGAATTTGGTTTTACTCCTCAGCTATGGAGGTGTCCCTGATGACTATTTTATGGAAATATTGAAGAATGCATTAGAAGAGTCACAGACTTTTTTTACGAAGAAACGTGCAGCACTTAAAGTTTCTCTCAATTATGGTGGTCTTGACGATCTCGCTGCAGCAAAAATGATTTTATCGGGGATTCCCCTTGAGGAGTCATTTTTGAAGTACAGGATGTCAGTATTATTAAATGAGGAAAGGAAGAGCCTTCGAGTAGGAAGGCTCCCTATACCTGACTCTTTCTATTTAATGGGAACAGTCGATCCAACTGGACTTCTAAAACGTGATGAAGTCAGCATTATCTTGGATAATGGACAGCTTAGAGGAAAAGTGCTTGTATACCACCAACCCGGTATACATTTTGGAGACATTCATGTACTAAATGCTAAATATGTGGAAGCCTTACATGAATATGTAGGACATGCCAAGTATGCCATATTCTTTCCTAGTAAAGGTCCACGCTCTTTGGCTGATGAGATGGCTGGGGCTGACTTTGATGGTGATTTATTTTTCGTATCAAGAAATCCCCAGCTACTGATTGTTGTATATCTGAAGTTATTGGAGTACTACAAAGTAAGTGAACCGTGGATAGAAATGCCTTCTACGAGTGGAGTTTCCAATGAAGGACCAAGTGAGGTTTCAAAGGAAAATTTGGAGGATGAGCTCTTCGAGCAATTCTTGAGCACTAGGTTTCAGCCGAGGAGATGGCAACTGGCTCAAGGATCTCATATAGGTGGAGTTGCTGAGTGTGGTGGTGTTAATATCATAGAAGCTGTTGCTTTTGCTTTTGATCTAAAGGTGCTTTTGGCTGCTTTCAGTTTTGCCCTGAGTGCTTCATCTGATTGCTGGACAGCGATAATGGATCGCTTTCTTACTCTAAAAGATGATAATACTCATGAGAAAGATCAAGTAAAGAAGAACCTGCTACGCTTGGTTGATTTATATTATGAGGCTCTGGATGCACCAAAGAATGGAAAAAAGATTGAAGTTCCAGGAGACTTGAGGGTTAGTTTATTTCCACACTATATGGAAAAGAAGAATTCCTTCAAATCTACTTCTATCTTGGGAAAAATATATGATTTTGTCAAATCCTATGCAGAACTGCAGTCAAATCATATAGAAGTTCAAAAGCTCCCGTTTTTCGTTGGTGGCTTTTCCGAGGAACTTGCAGCAATATGGGGTCGACATTATGATCAGTACAGGCAAGAGATGGTGAGTGCTCTGTCTTGCAATACCAAAGAAGAGAAAGAAGAAGCTGCTACTGCACTTTTTAACAAATACAAGAAGATATTGTATGGGGCTACCGAGATCGAGCAGAGGGAAAGGCCTCTTGATCAAATCCACCAGGAAGCTCGTGCCATTTACAACGTTTGTTATGATTATGCTAGGCAAGTTAATGACGTGAAGAAATGTGGATTTGCATGGAAAGTTGCAGGGGCAGCTTTGTTAAACATGTATGTCTCCAACCATAATGAAATGTTATTGCCAACTGTTCCTTCCGTCTTGAAGGAACTCTTTTCTTAA |
| Protein: MEGNLVNFQEAKGVPLPPTVEAAISRIRCKHDQPPLSESTRQKLASIGEAESLRMLKISENKEVLYSFENYLKALIQNGTNSPQKRPSSSQGICSSTSLSSPGKTIRLMNSSSSPGANNGDFQTPTTTQVQTYPLMSCSQGAESGVIQTPAFPTPPLSASSANVAIEGGSGSHLEALGELQFRKQFLILNYIGLEKLEEAFKTADEIRKLKDLAMDDFEDKVCDAAGGSMKLADRCKSSQWESGMTHNYYCHVSDNRSFNFKGPYLDKARNHLQKVLGDDNILNVKFDNVKDDKSSARNHRYAVYRKIAKEGIVVGLRRYRFFVFKDGGKEARKKDPTASVRCYFVRFESNASIDDGEEYILSGKTVQDARCVFMHIHTVSNMAKYMARFSLILSKTMKLEVDMTDQVNVEKIEDILCLDEDGCSVYDKDGKPRIHSDGTGYISEDLALKCPANVFKGSILKGYNVEGKLSDIEQTESHHRVPPLLVQVRLFHKGRAVKGTLLVNKKLPHGTIQIRPSMIKVEQDPERSNICTRDSLEVVTTSNQPRNTTLSRNLVLLLSYGGVPDDYFMEILKNALEESQTFFTKKRAALKVSLNYGGLDDLAAAKMILSGIPLEESFLKYRMSVLLNEERKSLRVGRLPIPDSFYLMGTVDPTGLLKRDEVSIILDNGQLRGKVLVYHQPGIHFGDIHVLNAKYVEALHEYVGHAKYAIFFPSKGPRSLADEMAGADFDGDLFFVSRNPQLLIVVYLKLLEYYKVSEPWIEMPSTSGVSNEGPSEVSKENLEDELFEQFLSTRFQPRRWQLAQGSHIGGVAECGGVNIIEAVAFAFDLKVLLAAFSFALSASSDCWTAIMDRFLTLKDDNTHEKDQVKKNLLRLVDLYYEALDAPKNGKKIEVPGDLRVSLFPHYMEKKNSFKSTSILGKIYDFVKSYAELQSNHIEVQKLPFFVGGFSEELAAIWGRHYDQYRQEMVSALSCNTKEEKEEAATALFNKYKKILYGATEIEQRERPLDQIHQEARAIYNVCYDYARQVNDVKKCGFAWKVAGAALLNMYVSNHNEMLLPTVPSVLKELFS |